The Abbott lab in collaboration with the Campbell lab (UVA, Department of Biology) has made public our single-nuclei RNA-sequencing of over 100K cells from the ventrolateral medulla of mice.
The data from this project can be downloaded and explored through the Broad Institute Single Cell Portal (https://singlecell.broadinstitute.org/single_cell?type=study&page=1&terms=VLM).
Work using this dataset should cite our research paper in the Journal of Neuroscience (DOI: 10.1523/JNEUROSCI.2211-23.2024).
Broad Institute Single Cell Portal project ID
SCP2305 – All neurons DEG clustering
SCP2307 – Serotonin neurons DEG sub-clustering
SCP2306 – Cartpt neurons DEG sub-clustering
Code
zenodo.org/records/10048289 – The deposited file contains the R code used to process, cluster, and visualize the clustered data with Seurat software package for R.
The Abbott Lab 